Systematic analysis of barrier-forming FG hydrogels from Xenopus nuclear pore complexes.
http://www.ncbi.nlm.nih.gov –
Nuclear pore complexes (NPCs) control the traffic between cell nucleus and cytoplasm. While facilitating translocation of nuclear transport receptors (NTRs) and NTR·cargo complexes, they suppress passive passage of macromolecules 30 kDa. Previously, we reconstituted the NPC barrier as hydrogels comprising S. cerevisiae FG domains. We now studied FG domains from 10 Xenopus nucleoporins and found that all of them form hydrogels. Related domains with low FG motif density also substantially contribute to the NPC's hydrogel mass. Read more »

Category: Nuclear Pore Complex Tags:
Regulation of nuclear envelope permeability in cell death and survival.
http://www.ncbi.nlm.nih.gov –
The nuclear pore complex (NPC) mediates macromolecular exchange between nucleus and cytoplasm. It is a regulated channel whose functional properties are modulated in response to the physiological status of the cell. Identifying the factors responsible for regulating NPC activity is crucial to understand how intracellular signaling cues are integrated at the level of this channel to control nucleocytoplasmic trafficking. For proteins lacking active translocation signals the NPC acts as a molecular sieve limiting passage across the nuclear envelope (NE) to proteins with a MW below ~40 kD. Read more »

Category: Nuclear Pore Complex Tags:
Rho GTPases mediate the mechanosensitive lineage commitment of neural stem cells.
http://www.ncbi.nlm.nih.gov –
Adult neural stem cells (NSCs) play important roles in learning and memory and are negatively impacted by neurological disease. It is known that biochemical and genetic factors regulate self-renewal and differentiation, and it has recently been suggested that mechanical and solid-state cues, such as extracellular matrix (ECM) stiffness, can also regulate the functions of NSCs and other stem cell types. Read more »
Year of publication:
2011
Journal name:
Stem Cells
The Importin Beta binding domain as a master regulator of nucleocytoplasmic transport.
http://www.sciencedirect.com –
Specific and efficient recognition of import cargoes is essential to ensure nucleocytoplasmic transport. To this end, the prototypical karyopherin importin β associates with import cargoes directly or, more commonly, through import adaptors, such as importin α and snurportin. Adaptor proteins bind the nuclear localization sequence (NLS) of import cargoes while recruiting importin β via an N-terminal importin β binding (IBB) domain. Read more »
Year of publication:
2012
Journal name:
Biochimica et Biophysica Acta (BBA)

Category: Nuclear Pore Complex Tags:
Nucleocytoplasmic transport: a role for nonspecific competition in karyopherin-nucleoporin interactions.
http://www.ncbi.nlm.nih.gov –
Nucleocytoplasmic transport occurs through the nuclear pore complex (NPC), which in yeast is a ~50 MDa complex consisting of ~30 different proteins. Small molecules can freely exchange through the NPC, but macromolecules larger than ~40 kDa must be aided across by transport factors, most of which belong to a related family of proteins termed karyopherins (Kaps). These transport factors bind to the disordered phenylalanine-glycine (FG) repeat domains in a family of NPC proteins termed FG nups, and this specific binding allows the transport factors to cross the NPC. Read more »
Year of publication:
2012
Journal name:
Molecular and Cellular Proteomics

Category: Nuclear Pore Complex Tags:
Mechanics regulates fate decisions of human embryonic stem cells.
http://www.ncbi.nlm.nih.gov –
Research on human embryonic stem cells (hESCs) has attracted much attention given their great potential for tissue regenerative therapy and fundamental developmental biology studies. Yet, there is still limited understanding of how mechanical signals in the local cellular microenvironment of hESCs regulate their fate decisions. Here, we applied a microfabricated micromechanical platform to investigate the mechanoresponsive behaviors of hESCs. We demonstrated that hESCs are mechanosensitive, and they could increase their cytoskeleton contractility with matrix rigidity. Read more »
Year of publication:
2012
Journal name:
PloS One
Virus strategies for passing the nuclear envelope barrier.
http://www.ncbi.nlm.nih.gov –
Viruses that replicate in the nucleus need to pass the nuclear envelope barrier during infection. Research in recent years indicates that the nuclear envelope is a major hurdle for many viruses. This review describes strategies to overcome this obstacle developed by seven virus families: herpesviridae, adenoviridae, orthomyxoviridae, lentiviruses (which are part of retroviridae), hepdnaviridae, parvoviridae and polyomaviridae. Most viruses use the canonical nuclear pore complex (NPC) in order to get their genome into the nucleus. Read more »

Category: Nuclear Pore Complex Tags:
The permeability of reconstituted nuclear pores provides direct evidence for the selective phase model.
http://www.ncbi.nlm.nih.gov –
Nuclear pore complexes (NPCs) maintain a permeability barrier between the nucleus and the cytoplasm through FG-repeat-containing nucleoporins (Nups). We previously proposed a "selective phase model" in which the FG repeats interact with one another to form a sieve-like barrier that can be locally disrupted by the binding of nuclear transport receptors (NTRs), but not by inert macromolecules, allowing selective passage of NTRs and associated cargo. Here, we provide direct evidence for this model in a physiological context. Read more »
Year of publication:
2012
Journal name:
Cell

Category: Nuclear Pore Complex Tags:
Structural characterization of nanoscale meshworks within a nucleoporin FG hydrogel.
http://www.ncbi.nlm.nih.gov –
The permeability barrier of nuclear pore complexes (NPCs) controls all exchange of macromolecules between the cytoplasm and the cell nucleus. It consists of phenylalanine-glycine (FG) repeat domains apparently organized as an FG hydrogel. It has previously been demonstrated that an FG hydrogel derived from the yeast nucleoporin Nsp1p reproduces the selectivity of authentic NPCs. Here we combined time-resolved optical spectroscopy and X-ray scattering techniques to characterize such a gel. Read more »
Year of publication:
2012
Journal name:
Biomacromolecules

Category: Nuclear Pore Complex Tags:
Gradient of increasing affinity of importin beta for nucleoporins along the pathway of nuclear import.
http://www.ncbi.nlm.nih.gov –
Nuclear import and export signals on macromolecules mediate directional, receptor-driven transport through the nuclear pore complex (NPC) by a process that is suggested to involve the sequential binding of transport complexes to different nucleoporins. The directionality of transport appears to be partly determined by the nucleocytoplasmic compartmentalization of components of the Ran GTPase system. We have analyzed whether the asymmetric localization of discrete nucleoporins can also contribute to transport directionality. Read more »

Category: Nuclear Pore Complex Tags:
Self-regulated viscous channel in the nuclear pore complex.
http://www.ncbi.nlm.nih.gov –
The nuclear pore complex (NPC), the sole gateway for nucleocytoplasmic exchange in eukaryotic cells, allows for the passive diffusion of small molecules and transport-receptor-facilitated translocation of signal-dependent cargo molecules. Whether small molecules passively diffuse through a single central channel or through multiple holes of a hydrogel network is a subject of debate. Additionally, whether the passive and facilitated transport systems occupy distinct or overlapping physical regions of the NPC remains unclear. Read more »
Year of publication:
2012
Journal name:
PNAS

Category: Nuclear Pore Complex Tags:
Simulations of nuclear pore transport yield mechanistic insights and quantitative predictions.
http://www.ncbi.nlm.nih.gov –
To study transport through the nuclear pore complex, we developed a computational simulation that is based on known structural elements rather than a particular transport model. Results agree with a variety of experimental data including size cutoff for cargo transport with (30-nm diameter) and without (< 10 nm) nuclear localization signals (NLS), macroscopic transport rates (hundreds per second), and single cargo transit times (milliseconds). Read more »
Year of publication:
2011
Journal name:
PNAS

Category: Nuclear Pore Complex Tags:
Hikeshi, a nuclear import carrier for Hsp70s, protects cells from heat shock-induced nuclear damage.
http://www.ncbi.nlm.nih.gov –
During heat shock stress, importin β family-mediated nucleocytoplasmic trafficking is downregulated, whereas nuclear import of the molecular chaperone Hsp70s is upregulated. Here, we identify a nuclear import pathway that operates during heat shock stress and is mediated by an evolutionarily conserved protein named "Hikeshi," which does not belong to the importin β family. Hikeshi binds to FG-Nups and translocates through nuclear pores on its own, showing characteristic features of nuclear transport carriers. Read more »
Year of publication:
2012
Journal name:
Cell

Category: Nuclear Pore Complex Tags:
Lighting up the nuclear pore complex
http://www.discoveryandinnovation.com –
It is generally accepted that transport through the nuclear pore complex (NPC) involves an abundance of phenylalanine–glycine rich protein domains (FG-domains) that serve as docking sites for soluble nuclear transport receptors (NTRs) and their cargo complexes. But the precise mechanism of translocation through the NPC allowing for high speed and selectivity is still vividly debated. Read more »

Category: Nuclear Pore Complex Tags:
How viruses access the nucleus.
http://www.ncbi.nlm.nih.gov –
Many viruses depend on nuclear proteins for replication. Therefore, their viral genome must enter the nucleus of the host cell. In this review we briefly summarize the principles of nucleocytoplasmic transport, and then describe the diverse strategies used by viruses to deliver their genomes into the host nucleus. Read more »

Category: Nuclear Pore Complex Tags:
Translocation through the nuclear pore: Kaps pave the way
http://www.ncbi.nlm.nih.gov –
Transport through the nuclear pore complex (NPC), a keystone of the eukaryotic building plan, is known to involve a large channel and an abundance of phenylalanine–glycine (FG) protein domains serving as binding sites for soluble nuclear transport receptors and their cargo complexes. However, the conformation of the FG domains in vivo, their arrangement in relation to the transport channel and their function(s) in transport are still vividly debated. Read more »

Category: Nuclear Pore Complex Tags:
Matrix Elasticity Directs Stem Cell Lineage Specification
http://www.seas.upenn.edu –
Microenvironments appear important in stem cell lineage specification but can be difficult to adequately characterize or control with soft tis- sues. Naive mesenchymal stem cells (MSCs) are shown here to specify lineage and commit to phenotypes with extreme sensitivity to tissue- level elasticity. Soft matrices that mimic brain are neurogenic, stiffer matrices that mimic mus- cle are myogenic, and comparatively rigid matrices that mimic collagenous bone prove osteogenic. Read more »
Cancer invasion and the microenvironment: plasticity and reciprocity.
http://www.ncbi.nlm.nih.gov –
Cancer invasion is a cell- and tissue-driven process for which the physical, cellular, and molecular determinants adapt and react throughout the progression of the disease. Cancer invasion is initiated and maintained by signaling pathways that control cytoskeletal dynamics in tumor cells and the turnover of cell-matrix and cell-cell junctions, followed by cell migration into the adjacent tissue. Here, we describe the cell-matrix and cell-cell adhesion, protease, and cytokine systems that underlie tissue invasion by cancer cells. Read more »

Category: Cancer Cells Tags:
Structural biology of nucleocytoplasmic transport.
http://www.ncbi.nlm.nih.gov –
In eukaryotic cells, segregation of DNA replication and RNA biogenesis in the nucleus and protein synthesis in the cytoplasm poses the requirement of transporting thousands of macromolecules between the two cellular compartments. Transport between nucleus and cytoplasm is mediated by soluble receptors that recognize specific cargoes and carry them through the nuclear pore complex (NPC), the sole gateway between the two compartments at interphase. Read more »
Year of publication:
2007
Journal name:
Annual Reviews Biochemistry

Category: Nuclear Pore Complex Tags:
The nuclear pore complex.
http://www.ncbi.nlm.nih.gov –
Nuclear pore complexes, the conduits for information exchange between the nucleus and cytoplasm, appear broadly similar in eukaryotes from yeast to human. Precisely how nuclear pore complexes regulate macromolecular and ionic traffic remains unknown, but recent advances in the identification and characterization of components of the complex by proteomics and genomics have provided new insights. Read more »
